Sheep mtDNA tree Build 1 (Jun 1, 2014)
Nucleotide position numbers are relative to the AF010406. Mutations are transitions unless an exact base change is specified.
Coding region mutations (np 1-15436) are shown in black; control region mutations (np 15437-16616) in blue.
Mutations toward a base identical-by-state to the AF010406 are indicated with the prefix @.
"R" and "Y" specify the heteroplasmic status of A/G and C/T at a certain site, respectively.
Deletions are indicated by a "d" after the deleted nucleotide position.
Insertions are indicated by a "+" followed by the position number and type of inserted nucleotide(s).
569d likely due to sequencing errors in Meadows et al. Heredity (2011) is not considered.
mt-MRCA
   
AB 1563 1788 2867 3023 5137 6738 7096 9282 10094 13361 13806 14854 16546
     
A 291 2966 3431 4215 4443 5565 6510 7141 7216 7719G 8039 8148 8256 9128 9188 9996 11023 11846 12023 13097 13837 15459 15484 15547 15635 15638 15639 15642+T 15645 15656 15657 15731 15858 15864 15881 15939 15957 15958 15982 16022
     
  A1 1099T 2443 11606 15714 15789 15944
       
    A1a 3624 4053 5880 12692 14518 15642
         
      15461 15732 15807 KF302440 KF302441 KF302442 KF302443 KF302444
                                                                   
      5643 8096                                             KF302445
                       
    A1b @15657
       
      2224 7726 8125 8175 11032 12644 15743 15818 15893 @15972   HM236174
                                                               
      10714 @15944                                                             HM236175
     
    A1c 4293 14965 @16048                                                               KF302446
     
  A2 @281 @566+G @1112 2199 4428 4452 @4935 5295 5382 6672 7321 7504 8538 8897 9603 9666 9974 10937 13523 15732 15859 15917 15918C @15956 15931                                         KF977847
   
B 538 1112 2774 3218 3662 4182 4839 4915 4935 5784 6267 6555 6628 6726 7435 7983 8121 8376 9284 9756 10118 10549 12287 13172 13436 13576 13855 14467 15583 15597 15708 @15783 15806 15956 15972 15978 16020 16036 16042 16048 16096 16097 16209 16217 16453 16602
   
  B1 10783 10852 11317 11482 11491 11834 16440
       
  B1a 11783 14653
       
    B1a1 16472d
       
      B1a1a 4397 7720 7983 11434 14830 14878 15958 16400 16409
           
          15082 KF302450 KF302451
                                                                     
          7754 14167 15732 15858                                       KF302449
                         
      B1a1b 15721 15783 15800 15820
           
        281 566+G 1729+C 3543A 6615 7500A 8264C 8651 9375 11668 11710d 12539C 12571C 13199 13813C 14055 16128 16342+C 16343                                       AF010406
                                                                   
        1114 3035 5817 7513 7886 7928 7983 8077G 8092 8166T 15091+G 15097d  15579C 16096 16453 16472d                                           KF977846
       
    B1a2 15923
       
      B1a2a @15783
         
        B1a2a1 7983
           
          B1a2a1a 3023 7759 10417 15931 15978
               
            B1a2a1a1 3218 12944 15262 16498
                 
                9250 15858                 KF302458
                                                     
                5695 10951                                     KF302459
                               
              8500 15858 15871 15912                                   KF302457 KF302456
                             
          B1a2a2a 5361 8798 9455 10922 14041 14487 15103 15773 15807 15854A 15893                 KF302454
                                           
              11429                                                       KF302455
                                                                     
          B1a2a3a 8538 8735 9026 10402 11792 12782 15618 15708 15743 15818 15933 15978 15983 16036 16392 16602                                         EF490453
           
        B1a2a2 1114 2272 9528 9741 11903 11915 12031 14863 14871 16019 16277 16453
           
            12305 KF302452
                                                                     
            9218                                                         KF302453
           
        B1a2a3 13626 15040 15603 16356 16453                                                       EF490452
         
      B1a2b 15881 15931
         
        B1a2b1 16347 16602
             
            2760 4788 9213 13960T 14699 14878                 KF302461
                                               
            4419 8753 9968 14416 16544                                     KF302462
                           
          4788 7855 13776                                                         KF302460
         
        2426 7127 KF977845
                                                                     
        810T 6728 7066 7983 8735 8988 10024 12125 15618 15657 15670 15679 15743 15818 15858 15894 15957 15978 16264 16277 16392                                         EF490454
       
    B1a3 3668 4860 7983 11939 15445 15873 15895 16008 16036 16392 HM236184
                                                           
        15798                                             HM236185
                       
    B1a4 4908 11696                                                             HM236177
         
        @566+G                                                             HM236176
       
      3131 5361 7180 11053 11745 15040 15855 15858 15859                                                       EF490456
                                                                     
      7983 9416 14659 15670 15807 15977 16602                                                         EF490455
                                                                     
      41 1114 3035 5574 6375 13588 14377 14871 15633 15725 15961 15963                                                     EF490451
     
  B1b 885 2342T 5424 5562 8383 11273 11473 12198 14482 14871                 KF302448
                                         
  B2 8239 11023 11606 12305 13738 14871                                                             KF302447
 
CDE 9579 @11783 15727 15802 15877 15963 16008
 
CE 711 1247 1413 1469 1683 2621 2903 3338 3431 3930 4008 4208 4224 4428 4524 5763 5850A 5901 5979 6423 6834 7000 7174 7466 7639 7645 7755 7773 7918 8413 8816 9056 9374 9582 9636 9789 10002 10367 10924 11152 11338 11454 11915 12086 12326 12521 12887 13151 13154 13552 13675 13810 14365 14551 14634 14971 15097 15509 15607 15629 15729+T 15804+T @15806 15965 15967 15971 15977 16133 16156 16429
   
C 69 160 1243+A 1502 1515 2181 4489 7111 7225 7814 10115 10531 11392 11832 12197 13091 13605 14554 14893 15148 15551 15698 15858 15879+T @15972 @16020 @16042 16044 16101 16444
     
    7975 9996 12306 15645 15646 15676 15853 HM236178
                                                               
    1122 2763A 3233 4641 8047 10618 15463 @15708 15773 15933                                       HM236179
                   
E 950 1100 2196T 4071 4467 @4839 5147 7889 8352T 9079 9483 10127 11807 11921 13433 13585 15476 15957 15985 16202
   
  3668 5511 8424 10459 @11710d 11710 @15708 15783 15879+C                 HM236182
                                         
  891 3242 8331 8403 11368 11869 13046 13605 14959 15668 15858 15879+T 15933 15993 @16042 16601T                               HM236183
                 
D 1145 1160 1228A 3008 3609 3990 4302 4489 4608 5279 5412 5768 6174 6354 7237 7475 7582 7756 7759A 7989 8424 8846 10047 10219 10437 10450 10534 10567 10669 11056 11128 11527 12827 13013 13160 13165 13403A 13406 13623 13714 13825 13915 13999 14239 14293 14401 14416 14624 14986 15181 15232 15512 15600 15622 15647C 15649 15733 15745 15881 15939 15974 @15978 15993 16064 16129 @16217 16306 16400 16420 16444 HM236180
 
@566+G 8849                                                                 HM236181