Yak and wild yak mtDNA tree Build 1 (Jun 1, 2014)
Nucleotide position numbers are relative to the GQ464259. Mutations are transitions unless an exact base change is specified.
Coding region mutations (np 893-16322) are shown in black; control region mutations (np 1-892) in blue.
Mutations toward a base identical-by-state to the GQ464259 are indicated with the prefix @.
"R" and "Y" specify the heteroplasmic status of A/G and C/T at a certain site, respectively.
Deletions are indicated by a "d" after the deleted nucleotide position.
Insertions are indicated by a "+" followed by the position number and type of inserted nucleotide(s).
The length variations in the C tract scored at np 751 (751+C, 751+2C) and 892 (881G, 892+C, 892+2C, 892d, 892+GGTGGG) were not considered for phylogenetic reconstruction and were therefore excluded from the tree.
GQ464260 appears remote to ABCD and serves as an outgroup sequence which is excluded from the tree.
mt-MRCA
 
AB 187 248 255 275 292 308 309 316 325 355 390 391 500 538 693 696 719 730 810 1612 2629 3498 3676 5390 6491 6761 6764 7409 7941 7950 8400 8481 8484 8523 8875 8938 10477 10498 10534 12314 12323 12383 12823 13086 13530 13786 14675 15287 15398 15503
   
A 295 8382 15089
   
  A1 160+A 256
     
    A1a 4895 7808                               GQ464271 GQ464274 GQ464277 GQ464285 GQ464308
       
      A1a1 248                               GQ464281 GQ464301 GQ464312
         
          249 253 8247                           GQ464275
           
          313 390 11900 12454 14244                         GQ464283
           
          508                             GQ464302
           
          708                             GQ464299
           
          9033 14049                           GQ464309
         
      A1a2 314
         
          @327                             GQ464279
           
          761+A 12182A                           GQ464292
         
      A1a3 333
         
          282d                             GQ464289
           
          4381 5926 8968                           EF494179
           
          6929                             GQ464295
           
          538                             KJ463418
         
      A1a4 @160+A                               GQ464273
         
          159                             GQ464294
         
        266                               JQ846020
         
        538                               GQ464290
         
        2029                               GQ464263
         
        9764                               GQ464307
         
        10507A 15824                             GQ464305
         
        9342 12672 14606                             GQ464280
         
        505G 3130 7484 10176 10251                           JQ692071
       
    A1b 172 745 7598 13308
         
      A1b1 163 4780                               GQ464298
         
          284 12675 13062A                           GQ464306
         
        11678                               GQ464282
       
    A1c 111 10820 11231 13867 14534                             GQ464254
       
      4689                               GQ464255
     
  A2 333 2302 10588 14241
       
    266 15619                                 GQ464246 GQ464264
     
    281 11699 13110                               GQ464247
   
B 15833
   
  B1 2866
     
  B1a 266 397 4258 10075
     
    B1a1 247
       
      B1a1a 1696 14903
         
        B1a1a1 8999
           
        B1a1a1a 9140
           
          355 2220 6106G 7808                     EF494178
           
          11137                       EF494177
           
          6512                         GQ464268
         
        248 318 708 12270                         GQ464314
       
      B1a1b 11939 15344                           GQ464248
       
    B1a2 390
       
        305 15684                             GQ464258
         
        396 1480d 5400                           JQ437480
         
        7220 10879                           GQ464297
       
      267                               GQ464286
     
      896 5177 12208 16029                             GQ464256
     
  B1b 328 5423 15074
     
    B1b1 15397                               GQ464270
       
      10477                             GQ464272
     
    11330                               GQ464252 GQ464253
   
  B2 327
     
    160+A 3877 4823 6971 9730C 10504 10820 14094                         GQ464265
   
    5015 8556 13113 15093 15719                             GQ464259
   
  B3 248 314 390 696 708 3970 7469 7808 7917 11291 15959 16088                         GQ464266
 
CD 135 142 193 987 1082 1656 2007A 2398 2647 2852 3502 4881 5693 5748 6500 6866 8415 8577 8848 9756 10083 10338 10645 10824 11315 11711 12131 12252 12320 12675 12804 14645 15332 15419 15950
   
C 117 220 249 333 3760 7271
     
C1 110T
   
  C1a 4493 11635                               GQ464303
     
    C1a1 12714 15034                             GQ464269 GQ464278
       
        5484 5801 14921                           JQ846021
       
      11084                               GQ464287
       
      440 4529 9161                             GQ464284
       
      131 3853 15336T                             GQ464300
     
  C1b 218T 4421
       
      34 8821C                             JQ846022
       
      486 2694A 13569 14636                           GQ464250
       
      1970                               GQ464261
     
    423 13146T 15441                               GQ464293
   
C2 1147 5222 7836
   
    3099 10453                               GQ464262
   
    8256                               GQ464257
 
D 310 @7409 11554
 
D1 8655
   
  6960 7424 15242                               GQ464296 GQ464291
   
  333 10537 15294                               GQ464304
 
D2 333 @355 4525 6485                                 GQ464249